CVE-2026-31965

HIGHNVD 8.28.2—
EchelonGraph scoreMEDIUM confidence

This high-severity CVE scores 8.2 under NVD CVSS v3. EPSS exploit probability: 0.4%, top 70% of all CVEs by exploit prediction. GitHub Security Advisory data not yet ingested — confidence will rise once GHSA publishes (typical lag: hours to days for open-source ecosystem CVEs; never for infrastructure-only CVEs).

Triggered by: NVD CVSS baseline
Sources: epss, nvd
8.2EG
EchelonGraph verdictPlan a fixSerious severity, but no confirmed exploitation yet.
  • High severity, but no confirmed exploitation yet
CISA-KEV: Not listedEPSS PROB: 0%CVSS: 8.2Exploit: None knownExposed: 0

No vendor fix yet — apply a workaround or compensating control (WAF / firewall / segmentation) and watch for a patch.

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the cram_decode_slice() function called while reading CRAM records, validation of the reference id field occurred too late, allowing two out of bounds reads to occur before the invalid data was detected. The bug does allow two values to be leaked to the caller, however as the function reports an error it may be difficult to exploit them. It is also possible that the program will crash due to trying to access invalid memory. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

CVSS v3
8.2
EG Score
8.2(medium)
EG Risk
42(Track)
EG Risk 42/100SSVC: Track

EG Risk is EchelonGraph's 0–100 priority score: it fuses intrinsic severity with real-world exploitation and automatability so you can rank equal-severity CVEs and fix the most dangerous first. Higher = act sooner. Distinct from the 0–10 EG Score (severity).

How it’s computed
Severity82% × 45%
Exploitation0% × 40%
Automatability30% × 15%
Action: Routine — remediate on your standard cadence.
EPSS PROB
0%
EPSS %ILE
31%
KEV
Not listed

Published

March 18, 2026

Last Modified

June 17, 2026

Advisory Details (2)

Auto-updated Aug 2, 2026
Patch available. Sources: github_commit, github.
github Patch Available

Out-of-bounds reads in HTSlib CRAM reader due to improper validation of input · Advisory · samtools/htslib · GitHub

https://github.com/samtools/htslib/security/advisories/GHSA-mqm2-v645-3qhr
github_commit Patch Available

commit 9cefb46453ad (samtools/htslib)

Patch available: samtools/htslib 1.23.1 (contains commit 9cefb46453ad)

https://github.com/samtools/htslib/commit/9cefb46453ad471e933b8212d4f45920524d3357

Affected Packages

(4 across 4 ecosystems)
Debian:11(1)
PackageVulnerable rangeFixed inDependents
htslib1.11-4 ... 1.22.1+ds2-1 (23 versions)——
Debian:12(1)
PackageVulnerable rangeFixed inDependents
htslib1.16+ds-3 ... 1.22.1+ds2-1 (17 versions)——
Debian:13(1)
PackageVulnerable rangeFixed inDependents
htslib1.21+ds-1, 1.22.1+ds-1, 1.22.1+ds-2, 1.22.1+ds2-1——
Debian:14(1)
PackageVulnerable rangeFixed inDependents
htslib1.21+ds-1, 1.22.1+ds-1, 1.22.1+ds-2, 1.22.1+ds2-1——

Weakness Classification(2)

MITRE Common Weakness Enumeration — the root-cause categories this CVE belongs to.

Data Freshness Timeline

(refreshed 6× in last 7d / 30× in last 30d)

Each row is a source pipeline that fetched or updated this CVE on that date, with what changed. For example, "NVD update" means NVD published or revised its analysis for this CVE; "MITRE cvelistV5" means we ingested or refreshed it from the CNA feed. Most recent first.

  1. 2026-09-18 19:28 UTCEPSS rescore
  2. 2026-09-18 19:27 UTCEPSS rescore
  3. 2026-09-17 19:30 UTCEPSS rescore
  4. 2026-09-16 14:08 UTCEPSS rescore
  5. 2026-09-16 05:15 UTCEPSS rescore
  6. 2026-09-13 16:47 UTCEPSS rescore
  7. 2026-09-12 15:01 UTCEPSS rescore
  8. 2026-09-11 14:52 UTCEPSS rescore
  9. 2026-09-10 09:34 UTCEPSS rescore
  10. 2026-09-08 22:00 UTCEPSS rescore
  11. 2026-09-07 16:01 UTCEPSS rescore
  12. 2026-09-06 13:47 UTCEPSS rescore
  13. 2026-09-06 13:47 UTCEPSS rescore
  14. 2026-09-04 05:06 UTCEPSS rescore
  15. 2026-09-02 18:08 UTCOSV refresh
  16. 2026-09-02 14:11 UTCEPSS rescore
  17. 2026-09-01 13:53 UTCEPSS rescore
  18. 2026-09-01 04:39 UTCEPSS rescore
  19. 2026-09-01 04:39 UTCEPSS rescore
  20. 2026-08-30 19:17 UTCEPSS rescore
  21. 2026-08-30 01:22 UTCEPSS rescore
  22. 2026-08-28 21:41 UTCEPSS rescore
  23. 2026-08-27 14:25 UTCEPSS rescore
  24. 2026-08-26 14:46 UTCEPSS rescore
  25. 2026-08-25 13:49 UTCEPSS rescore
Show 40 more
  1. 2026-08-24 14:17 UTCEPSS rescore
  2. 2026-08-23 00:19 UTCEPSS rescore
  3. 2026-08-21 23:49 UTCEPSS rescore
  4. 2026-08-20 22:55 UTCEPSS rescore
  5. 2026-08-20 22:55 UTCEPSS rescore
  6. 2026-08-19 17:03 UTCEPSS rescore
  7. 2026-08-18 13:48 UTCEPSS rescore
  8. 2026-08-17 13:47 UTCEPSS rescore
  9. 2026-08-16 14:56 UTCEPSS rescore
  10. 2026-08-16 11:15 UTCEG score recompute
  11. 2026-08-16 02:14 UTCEPSS rescore
  12. 2026-08-15 01:30 UTCEPSS rescore
  13. 2026-08-14 07:23 UTCEG score recompute
  14. 2026-08-13 22:00 UTCEPSS rescore
  15. 2026-08-12 22:10 UTCEG score recompute
  16. 2026-08-12 13:50 UTCEPSS rescore
  17. 2026-08-11 21:30 UTCEG score recompute
  18. 2026-08-11 04:35 UTCEG score recompute
  19. 2026-08-11 00:00 UTCEPSS rescore
  20. 2026-08-09 17:55 UTCEG score recompute
  21. 2026-08-09 13:46 UTCEPSS rescore
  22. 2026-08-09 06:58 UTCEG score recompute
  23. 2026-08-08 16:37 UTCEPSS rescore
  24. 2026-08-07 17:30 UTCEG score recompute
  25. 2026-08-06 19:29 UTCEG score recompute
  26. 2026-08-06 13:46 UTCEPSS rescore
  27. 2026-08-06 01:37 UTCEG score recompute
  28. 2026-08-05 19:17 UTCEPSS rescore
  29. 2026-08-04 15:10 UTCEPSS rescore
  30. 2026-08-04 10:38 UTCEPSS rescore
  31. 2026-08-04 00:47 UTCEG score recompute
  32. 2026-08-03 10:36 UTCEPSS rescore
  33. 2026-08-02 16:40 UTCEG score recompute
  34. 2026-08-02 02:27 UTCEPSS rescore
  35. 2026-08-01 04:16 UTCEPSS rescore
  36. 2026-07-30 16:28 UTCEPSS rescore
  37. 2026-07-30 01:30 UTCEPSS rescore
  38. 2026-07-28 15:36 UTCEPSS rescore
  39. 2026-07-27 14:41 UTCEG score recompute
  40. 2026-07-27 14:27 UTCOSV refresh

Frequently asked(5)

What is CVE-2026-31965?
CVE-2026-31965 is a high vulnerability published on March 18, 2026. HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. In the cramdecodeslice() function called while reading CRAM records, validation of the reference id field occurred too late, allowing two out of bounds…
When was CVE-2026-31965 disclosed?
CVE-2026-31965 was first published in the National Vulnerability Database on March 18, 2026, with the most recent update on June 17, 2026. EchelonGraph re-ingests CVE updates from NVD on a 2-hour cycle, so this page reflects the latest published state.
Is CVE-2026-31965 actively exploited?
CVE-2026-31965 is not currently on CISA's Known Exploited Vulnerabilities catalog. FIRST EPSS estimates a 0% probability of exploitation in the next 30 days, which ranks it in the top 68.8% of all scored CVEs.
What is the CVSS score of CVE-2026-31965?
CVE-2026-31965 has a CVSS v3 base score of 8.2 (NVD).
How do I remediate CVE-2026-31965?
Patch to the fixed version published by the affected vendor. Where vendor advisories exist for CVE-2026-31965, EchelonGraph cross-links them in the Vendor Advisories panel below — those typically contain the canonical remediation steps, fixed version numbers, and any vendor-specific mitigations.

Dependency Blast Radius

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