CVE-2026-31962

HIGHNVD 8.88.8
EchelonGraph scoreLOW confidence

This high-severity CVE scores 8.8 under NVD CVSS v3. EPSS exploit-prediction score not yet available (the EPSS model rescores nightly; freshly-published CVEs typically appear within 48 hours). GitHub Security Advisory data not yet ingested — confidence will rise once GHSA publishes (typical lag: hours to days for open-source ecosystem CVEs; never for infrastructure-only CVEs).

Triggered by: NVD CVSS baseline
Sources: nvd
8.8EG
EchelonGraph verdictPlan a fixSerious severity, but no confirmed exploitation yet.
  • High severity, but no confirmed exploitation yet
CISA-KEV: Not listedEPSS PROB: —CVSS: 8.8Exploit: None knownExposed: 0

No vendor fix yet — apply a workaround or compensating control (WAF / firewall / segmentation) and watch for a patch.

HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to some quirks of the CRAM format, it is necessary to handle these records carefully as they will actually store data that needs to be consumed and then discarded. Unfortunately the cram_decode_seq() did not handle this correctly in some cases. Where this happened it could result in reading a single byte from beyond the end of a heap allocation, followed by writing a single attacker-controlled byte to the same location. Exploiting this bug causes a heap buffer overflow. If a user opens a file crafted to exploit this issue, it could lead to the program crashing, or overwriting of data and heap structures in ways not expected by the program. It may be possible to use this to obtain arbitrary code execution. Versions 1.23.1, 1.22.2 and 1.21.1 include fixes for this issue. There is no workaround for this issue.

CVSS v3
8.8
EG Score
8.8(low)
EG Risk
44(Track)
EG Risk 44/100SSVC: Track

EG Risk is EchelonGraph's 0–100 priority score: it fuses intrinsic severity with real-world exploitation and automatability so you can rank equal-severity CVEs and fix the most dangerous first. Higher = act sooner. Distinct from the 0–10 EG Score (severity).

How it’s computed
Severity88% × 45%
Exploitation0% × 40%
Automatability30% × 15%
Action: Routine — remediate on your standard cadence.
EPSS PROB
—
EPSS %ILE
—
KEV
Not listed

Published

March 18, 2026

Last Modified

June 17, 2026

Advisory Details (2)

Auto-updated Jul 27, 2026
Patch available. Sources: github_commit, github.
github Patch Available

Heap buffer overflow in HTSlib CRAM reader due to improper validation of input · Advisory · samtools/htslib · GitHub

https://github.com/samtools/htslib/security/advisories/GHSA-xxmp-v7h3-gpwp
github_commit Patch Available

commit d799b54c6401 (samtools/htslib)

Patch available: samtools/htslib 1.23.1 (contains commit d799b54c6401)

https://github.com/samtools/htslib/commit/d799b54c6401879187bba4741be83ff590ac73e3

Weakness Classification(4)

MITRE Common Weakness Enumeration — the root-cause categories this CVE belongs to.

Data Freshness Timeline

(refreshed 2× in last 7d / 2× in last 30d)

Each row is a source pipeline that fetched or updated this CVE on that date, with what changed. For example, "NVD update" means NVD published or revised its analysis for this CVE; "MITRE cvelistV5" means we ingested or refreshed it from the CNA feed. Most recent first.

  1. 2026-07-27 14:41 UTCEG score recompute
  2. 2026-07-27 14:27 UTCOSV refresh

Frequently asked(4)

What is CVE-2026-31962?
CVE-2026-31962 is a high vulnerability published on March 18, 2026. HTSlib is a library for reading and writing bioinformatics file formats. CRAM is a compressed format which stores DNA sequence alignment data. While most alignment records store DNA sequence and quality values, the format also allows them to omit this data in certain cases to save space. Due to…
When was CVE-2026-31962 disclosed?
CVE-2026-31962 was first published in the National Vulnerability Database on March 18, 2026, with the most recent update on June 17, 2026. EchelonGraph re-ingests CVE updates from NVD on a 2-hour cycle, so this page reflects the latest published state.
What is the CVSS score of CVE-2026-31962?
CVE-2026-31962 has a CVSS v3 base score of 8.8 (NVD). The EG score is currently aggregating — additional source signals are being incorporated as they become available..
How do I remediate CVE-2026-31962?
Patch to the fixed version published by the affected vendor. Where vendor advisories exist for CVE-2026-31962, EchelonGraph cross-links them in the Vendor Advisories panel below — those typically contain the canonical remediation steps, fixed version numbers, and any vendor-specific mitigations.

Dependency Blast Radius

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